3FR4 Lipid Binding Protein date Jan 08, 2009
title N-Benzyl-Indolo Carboxylic Acids: Design And Synthesis Of Po Selective Adipocyte Fatty-Acid Binding Protein (A-Fabp) Inh
authors T.Barf, K.Hammer, F.Lehmann, S.Haile, E.Axen, C.Medina, J.Uppenber S.Svensson, L.Rondahl, T.Lundb Ck
compound source
Molecule: Fatty Acid-Binding Protein, Adipocyte
Chain: A
Synonym: A-Fabp, Afabp, Fatty Acid-Binding Protein 4, Adipo Lipid-Binding Protein, Albp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fabp4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.216 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.034 53.628 31.896 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand F8A enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceN-Benzyl-indolo carboxylic acids: Design and synthesis of potent and selective adipocyte fatty-acid binding protein (A-FABP) inhibitors., Barf T, Lehmann F, Hammer K, Haile S, Axen E, Medina C, Uppenberg J, Svensson S, Rondahl L, Lundback T, Bioorg Med Chem Lett. 2009 Mar 15;19(6):1745-8. Epub 2009 Jan 30. PMID:19217286
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3fr4.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3FR4
  • CSU: Contacts of Structural Units for 3FR4
  • Likely Quarternary Molecular Structure file(s) for 3FR4
  • Structure Factors (51 Kb)
  • Retrieve 3FR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FR4 from S2C, [Save to disk]
  • Re-refined 3fr4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FR4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FR4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fr4] [3fr4_A]
  • SWISS-PROT database: [P15090]
  • Domain organization of [FABP4_HUMAN] by SWISSPFAM
  • Other resources with information on 3FR4
  • Community annotation for 3FR4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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