3FS1	Transcription	date	Jan 08, 2009
title	Crystal Structure Of Hnf4a Lbd In Complex With The Ligand An Coactivator Pgc-1a Fragment
authors	G.Rha, G.Wu, Y.Chi
compound		source
Molecule: Hepatocyte Nuclear Factor 4-Alpha Chain: A Fragment: Hnf4a Ligand Binding Domain Synonym: Hnf-4-Alpha, Transcription Factor Hnf-4, Nuclear R Subfamily 2 Group A Member 1, Transcription Factor 14; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hnf4, Hnf4a, Nr2a1, Tcf14 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pet
Molecule: Ppargamma Coactivator-1a (Pgc-1a) Chain: B Fragment: Pgc-1a Lxxll Motifs Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pgc-1a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Pgex
symmetry	Space Group: P 42 2 2	R_factor 0.190 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.049 113.049 57.322 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MYR	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Multiple binding modes between HNF4alpha and the LXXLL motifs of PGC-1alpha lead to full activation., Rha GB, Wu G, Shoelson SE, Chi YI, J Biol Chem. 2009 Dec 11;284(50):35165-76. Epub 2009 Oct 21. PMID:19846556

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (3fs1.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 3FS1 CSU: Contacts of Structural Units for 3FS1 Structure Factors (423 Kb) Retrieve 3FS1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FS1 from S2C, [Save to disk] Re-refined 3fs1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FS1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FS1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FS1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fs1_A] [3fs1_B] [3fs1] SWISS-PROT database: [P41235] Domain organization of [HNF4A_HUMAN] by SWISSPFAM Domain found in 3FS1: [HOLI ] by SMART

Other resources with information on 3FS1

Community annotation for 3FS1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---