3FT8 Chaperone date Jan 12, 2009
title Structure Of Hsp90 Bound With A Noval Fragment.
authors J.B.Barker, R.K.Y.Cheng, S.Palan, B.Felicetti
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain
Synonym: Hsp 86, Renal Carcinoma Antigen Ny-Ren-38
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15-B
symmetry Space Group: I 2 2 2
R_factor 0.235 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.464 90.973 99.138 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MOJ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment-based identification of Hsp90 inhibitors., Barker JJ, Barker O, Boggio R, Chauhan V, Cheng RK, Corden V, Courtney SM, Edwards N, Falque VM, Fusar F, Gardiner M, Hamelin EM, Hesterkamp T, Ichihara O, Jones RS, Mather O, Mercurio C, Minucci S, Montalbetti CA, Muller A, Patel D, Phillips BG, Varasi M, Whittaker M, Winkler D, Yarnold CJ, ChemMedChem. 2009 Jun;4(6):963-6. PMID:19301319
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3ft8.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3FT8
  • CSU: Contacts of Structural Units for 3FT8
  • Likely Quarternary Molecular Structure file(s) for 3FT8
  • Structure Factors (301 Kb)
  • Retrieve 3FT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FT8 from S2C, [Save to disk]
  • Re-refined 3ft8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FT8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FT8, from MSDmotif at EBI
  • Fold representative 3ft8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ft8_A] [3ft8]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 3FT8: [HATPase_c ] by SMART
  • Other resources with information on 3FT8
  • Community annotation for 3FT8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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