3FTH Protein Fibril date Jan 13, 2009
title Nflvhss Segment From Islet Amyloid Polypeptide (Iapp Or Amyl
authors J.J.W.Wiltzius, M.R.Sawaya, D.Eisenberg
compound source
Molecule: Nflvhss Heptapeptide From Islet Amyloid Polypepti
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.238 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
9.725 21.600 26.086 90.00 95.56 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand SO4 enzyme
Primary referenceMolecular mechanisms for protein-encoded inheritance., Wiltzius JJ, Landau M, Nelson R, Sawaya MR, Apostol MI, Goldschmidt L, Soriaga AB, Cascio D, Rajashankar K, Eisenberg D, Nat Struct Mol Biol. 2009 Sep;16(9):973-8. Epub 2009 Aug 16. PMID:19684598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (3fth.pdb1.gz) 3 Kb
  • Biological Unit Coordinates (3fth.pdb2.gz) 3 Kb
  • LPC: Ligand-Protein Contacts for 3FTH
  • CSU: Contacts of Structural Units for 3FTH
  • Likely Quarternary Molecular Structure file(s) for 3FTH
  • Structure Factors (14 Kb)
  • Retrieve 3FTH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FTH from S2C, [Save to disk]
  • Re-refined 3fth structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FTH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FTH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FTH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fth_A] [3fth] [3fth_B]
  • SWISS-PROT database: [P10997]
  • Domain organization of [IAPP_HUMAN] by SWISSPFAM
    • Other resources with information on 3FTH
  • Community annotation for 3FTH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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