3FVT Hydrolase date Jan 16, 2009
title Crystal Structure Of Acetyl Xylan Esterase From Bacillus Pum Monoclinic Crystal Form II
authors I.Krastanova, A.Cassetta, D.Lamba
compound source
Molecule: Acetyl Xylan Esterase
Chain: A, B, C, D, E, F, G, H, I, L, M, N
Ec: 3.1.1.6
Engineered: Yes
Organism_scientific: Bacillus Pumilus
Organism_taxid: 1408
Strain: Ps 213
Gene: Axe
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pbpeb2
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.039 87.205 184.825 90.00 112.87 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, GOL enzyme Hydrolase E.C.3.1.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, N, E, B, H, M, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (662 Kb) [Save to disk]
  • Biological Unit Coordinates (3fvt.pdb1.gz) 336 Kb
  • Biological Unit Coordinates (3fvt.pdb2.gz) 329 Kb
  • LPC: Ligand-Protein Contacts for 3FVT
  • CSU: Contacts of Structural Units for 3FVT
  • Structure Factors (2308 Kb)
  • Retrieve 3FVT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FVT from S2C, [Save to disk]
  • Re-refined 3fvt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FVT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FVT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FVT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fvt_G] [3fvt_L] [3fvt_I] [3fvt_M] [3fvt_E] [3fvt_A] [3fvt_N] [3fvt] [3fvt_D] [3fvt_C] [3fvt_H] [3fvt_B] [3fvt_F]
  • SWISS-PROT database: [Q9K5F2]
  • Domain organization of [Q9K5F2_BACPU] by SWISSPFAM
  • Other resources with information on 3FVT
  • Community annotation for 3FVT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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