3FWE Transcription Regulator date Jan 17, 2009
title Crystal Structure Of The Apo D138l Cap Mutant
authors H.Sharma, J.Wang, J.Kong, S.Yu, T.Steitz
compound source
Molecule: Catabolite Gene Activator
Chain: A, B
Synonym: Camp Receptor Protein, Camp Regulatory Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Strain: Dh5a
Gene: B3357, Cap, Crp, Csm, Jw5702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
symmetry Space Group: P 43 21 2
R_factor 0.227 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.996 67.996 230.113 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand PRO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of apo-CAP reveals that large conformational changes are necessary for DNA binding., Sharma H, Yu S, Kong J, Wang J, Steitz TA, Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16604-9. Epub 2009 Sep 16. PMID:19805344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3fwe.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 3FWE
  • CSU: Contacts of Structural Units for 3FWE
  • Structure Factors (370 Kb)
  • Retrieve 3FWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FWE from S2C, [Save to disk]
  • Re-refined 3fwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FWE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FWE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fwe_A] [3fwe] [3fwe_B]
  • SWISS-PROT database: [P0ACJ8]
  • Domain organization of [CRP_ECOLI] by SWISSPFAM
  • Domains found in 3FWE: [HTH_CRP] [cNMP ] by SMART
  • Other resources with information on 3FWE
  • Community annotation for 3FWE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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