3FWV Chaperone date Jan 19, 2009
title Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), I With Meevf Peptide
authors M.E.Jackrel, R.Valverde, L.Regan
compound source
Molecule: Hsc70hsp90-Organizing Protein
Chain: A, B
Fragment: Tpr Repeats 4-6
Synonym: Hop, Stress-Induced-Phosphoprotein 1, Sti1, Transf Sensitive Protein Ief Ssp 3521, Ny-Ren-11 Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stip1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Hta

Molecule: Heat Shock Protein Hsp 90-Beta
Chain: C, D
Fragment: C-Terminal Residues
Synonym: Hsp 90, Hsp 84
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: The Author States That The Peptide Is A Synt Peptide Based On The C-Terminal Region Of The Hsp90 Protein Mutated From The Sequence Meevd In Homo Sapiens To Meevf.
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.604 66.599 48.622 90.00 107.21 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ACE, NI enzyme
Primary referenceRedesign of a protein-peptide interaction: characterization and applications., Jackrel ME, Valverde R, Regan L, Protein Sci. 2009 Apr;18(4):762-74. PMID:19309728
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3fwv.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3fwv.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3FWV
  • CSU: Contacts of Structural Units for 3FWV
  • Likely Quarternary Molecular Structure file(s) for 3FWV
  • Structure Factors (173 Kb)
  • Retrieve 3FWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FWV from S2C, [Save to disk]
  • Re-refined 3fwv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FWV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FWV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fwv_B] [3fwv] [3fwv_D] [3fwv_C] [3fwv_A]
  • SWISS-PROT database: [P31948]
  • Domain organization of [STIP1_HUMAN] by SWISSPFAM
  • Domain found in 3FWV: [TPR ] by SMART
  • Other resources with information on 3FWV
  • Community annotation for 3FWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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