3FX0 Signaling Protein date Jan 19, 2009
title Crystal Structure Of Human Nemo Cc2_lz Domain
authors Y.C.Lo, S.C.Lin, H.Wu
compound source
Molecule: Nf-Kappa-B Essential Modulator
Chain: A, B
Fragment: Cc2_lz Domain
Synonym: Nemo, Nf-Kappa-B Essential Modifier, Inhibitor Of Nuclear Factor Kappa-B Kinase Subunit Gamma, Ikb Kinase Subunit Gamma, I-Kappa-B Kinase Gamma, Ikk-Gamma, Ikkg, Ikb Kinase-Associated Protein 1, Ikkap1, Fip-3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ikbkg, Fip3, Nemo
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28
symmetry Space Group: P 65
R_factor 0.247 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.194 76.194 76.892 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
Primary referenceStructural basis for recognition of diubiquitins by NEMO., Lo YC, Lin SC, Rospigliosi CC, Conze DB, Wu CJ, Ashwell JD, Eliezer D, Wu H, Mol Cell. 2009 Mar 13;33(5):602-15. Epub 2009 Jan 29. PMID:19185524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3fx0.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 3FX0
  • Likely Quarternary Molecular Structure file(s) for 3FX0
  • Structure Factors (115 Kb)
  • Retrieve 3FX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FX0 from S2C, [Save to disk]
  • Re-refined 3fx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FX0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FX0, from MSDmotif at EBI
  • Fold representative 3fx0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fx0_B] [3fx0] [3fx0_A]
  • SWISS-PROT database: [Q9Y6K9]
  • Domain organization of [NEMO_HUMAN] by SWISSPFAM
  • Other resources with information on 3FX0
  • Community annotation for 3FX0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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