3FY2 Transferase date Jan 21, 2009
title Human Epha3 Kinase And Juxtamembrane Region Bound To Substra Kqwdnyefiw
authors T.Davis, J.R.Walker, F.Mackenzie, C.Bountra, J.Weigelt, C.H.Arrow A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics C (Sgc)
compound source
Molecule: Ephrin Type-A Receptor 3
Chain: A
Fragment: Juxtamembrane Segment And Kinase Domain: Residues
Synonym: Tyrosine-Protein Kinase Receptor Etk1, Hek, Hek4, Protein Kinase Tyro4;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha3, Etk, Etk1, Hek, Tyro4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic

Molecule: Peptide Substrate
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.824 38.261 76.365 90.00 102.05 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceStructural recognition of an optimized substrate for the ephrin family of receptor tyrosine kinases., Davis TL, Walker JR, Allali-Hassani A, Parker SA, Turk BE, Dhe-Paganon S, FEBS J. 2009 Aug;276(16):4395-404. PMID:19678838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3fy2.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 3FY2
  • Likely Quarternary Molecular Structure file(s) for 3FY2
  • Structure Factors (403 Kb)
  • Retrieve 3FY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FY2 from S2C, [Save to disk]
  • Re-refined 3fy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FY2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FY2, from MSDmotif at EBI
  • Fold representative 3fy2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fy2] [3fy2_B] [3fy2_A]
  • SWISS-PROT database: [P29320]
  • Domain organization of [EPHA3_HUMAN] by SWISSPFAM
  • Domain found in 3FY2: [TyrKc ] by SMART
  • Other resources with information on 3FY2
  • Community annotation for 3FY2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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