3FZM	Chaperone	date	Jan 26, 2009
title	Crystal Structures Of Hsc70bag1 In Complex With Small Molecule Inhibitors
authors	P.Dokurno, D.S.Williamson, J.B.Murray, A.E.Surgenor
compound		source
Molecule: Heat Shock Cognate 71 Kda Protein Chain: A Fragment: Unp Residues 4-381 Synonym: Heat Shock 70 Kda Protein 8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hspa8, Hsc70, Hsp73, Hspa10 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet101
Molecule: Bag Family Molecular Chaperone Regulator 1 Chain: B Fragment: Unp Residues 222-334 Synonym: Bag-1, Bcl-2-Associated Athanogene 1, Glucocorticoid Receptor-Associated Protein Rap46; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bag1, Hap Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2t
symmetry	Space Group: P 1 21 1	R_factor 0.200 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.750 121.382 53.951 90.00 106.60 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	3GO BindingDB	enzyme
Primary reference	Novel adenosine-derived inhibitors of 70 kDa heat shock protein, discovered through structure-based design., Williamson DS, Borgognoni J, Clay A, Daniels Z, Dokurno P, Drysdale MJ, Foloppe N, Francis GL, Graham CJ, Howes R, Macias AT, Murray JB, Parsons R, Shaw T, Surgenor AE, Terry L, Wang Y, Wood M, Massey AJ, J Med Chem. 2009 Mar 26;52(6):1510-3. PMID:19256508

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3fzm.pdb1.gz) 85 Kb LPC: Ligand-Protein Contacts for 3FZM CSU: Contacts of Structural Units for 3FZM Likely Quarternary Molecular Structure file(s) for 3FZM Structure Factors (324 Kb) Retrieve 3FZM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FZM from S2C, [Save to disk] Re-refined 3fzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FZM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3FZM

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3FZM, from MSDmotif at EBI Fold representative 3fzm from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fzm_A] [3fzm_B] SWISS-PROT database: [Q99933] [P11142] Domain organization of [BAG1_HUMAN] [HSP7C_HUMAN] by SWISSPFAM Domain found in 3FZM: [BAG ] by SMART Alignments of the sequence of 3FZM with the sequences similar proteins can be viewed for 3FZM's classification [BAG1_HUMAN] [HSP7C_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BAG1_HUMAN] [HSP7C_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3FZM

Community annotation for 3FZM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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