3FZM Chaperone date Jan 26, 2009
title Crystal Structures Of Hsc70bag1 In Complex With Small Molecule Inhibitors
authors P.Dokurno, D.S.Williamson, J.B.Murray, A.E.Surgenor
compound source
Molecule: Heat Shock Cognate 71 Kda Protein
Chain: A
Fragment: Unp Residues 4-381
Synonym: Heat Shock 70 Kda Protein 8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspa8, Hsc70, Hsp73, Hspa10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet101

Molecule: Bag Family Molecular Chaperone Regulator 1
Chain: B
Fragment: Unp Residues 222-334
Synonym: Bag-1, Bcl-2-Associated Athanogene 1, Glucocorticoid Receptor-Associated Protein Rap46;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bag1, Hap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.750 121.382 53.951 90.00 106.60 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 3GO BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceNovel adenosine-derived inhibitors of 70 kDa heat shock protein, discovered through structure-based design., Williamson DS, Borgognoni J, Clay A, Daniels Z, Dokurno P, Drysdale MJ, Foloppe N, Francis GL, Graham CJ, Howes R, Macias AT, Murray JB, Parsons R, Shaw T, Surgenor AE, Terry L, Wang Y, Wood M, Massey AJ, J Med Chem. 2009 Mar 26;52(6):1510-3. PMID:19256508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3fzm.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3FZM
  • CSU: Contacts of Structural Units for 3FZM
  • Likely Quarternary Molecular Structure file(s) for 3FZM
  • Structure Factors (325 Kb)
  • Retrieve 3FZM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FZM from S2C, [Save to disk]
  • Re-refined 3fzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FZM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FZM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FZM, from MSDmotif at EBI
  • Fold representative 3fzm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fzm] [3fzm_A] [3fzm_B]
  • SWISS-PROT database: [Q99933] [P11142]
  • Domain organization of [BAG1_HUMAN] [HSP7C_HUMAN] by SWISSPFAM
  • Domain found in 3FZM: [BAG ] by SMART
  • Alignments of the sequence of 3FZM with the sequences similar proteins can be viewed for 3FZM's classification [BAG1_HUMAN] [HSP7C_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BAG1_HUMAN] [HSP7C_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3FZM
  • Community annotation for 3FZM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science