3FZP Transferase date Jan 26, 2009
title Crystal Structure Of Pyk2 Complexed With Atpgs
authors S.Han
compound source
Molecule: Protein Tyrosine Kinase 2 Beta
Chain: A
Fragment: Unp Residues 416-692, Protein Kinase Domain
Synonym: Focal Adhesion Kinase 2, Fadk 2, Proline-Rich Tyrosine Kinase 2, Cell Adhesion Kinase Beta, Cak Beta, Calcium-Dependent Tyrosine Kinase, Cadtk, Related Adhesion Focal Tyrosine Kinase, Raftk;
Ec: 2.7.10.2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.946 92.663 42.671 90.00 92.45 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand AGS, SO4 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of proline-rich tyrosine kinase 2 (PYK2) reveals a unique (DFG-out) conformation and enables inhibitor design., Han S, Mistry A, Chang JS, Cunningham D, Griffor M, Bonnette PC, Wang H, Chrunyk BA, Aspnes GE, Walker DP, Brosius AD, Buckbinder L, J Biol Chem. 2009 May 8;284(19):13193-201. Epub 2009 Feb 25. PMID:19244237
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3fzp.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3FZP
  • CSU: Contacts of Structural Units for 3FZP
  • Likely Quarternary Molecular Structure file(s) for 3FZP
  • Structure Factors (270 Kb)
  • Retrieve 3FZP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FZP from S2C, [Save to disk]
  • Re-refined 3fzp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FZP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FZP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FZP, from MSDmotif at EBI
  • Fold representative 3fzp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fzp] [3fzp_A]
  • SWISS-PROT database: [Q14289]
  • Domain organization of [FAK2_HUMAN] by SWISSPFAM
  • Domain found in 3FZP: [TyrKc ] by SMART
  • Other resources with information on 3FZP
  • Community annotation for 3FZP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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