3G04 Immune System date Jan 27, 2009
title Crystal Structure Of The Tsh Receptor In Complex With A Thyr Stimulating Autoantibody
authors J.Sanders, D.Y.Chirgadze, P.Sanders, S.Baker, A.Sullivan, A.Bhard J.Bolton, M.Reeve, N.Nakatake, M.Evans, T.Richards, M.Powell, R.N T.L.Blundell, J.Furmaniak, B.R.Smith
compound source
Molecule: Human Thyroid Stimulating Autoantibody M22 Light
Chain: A
Fragment: Fab Fragment Light Chain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Mouse-Human Heterohybridoma Cell Line
Expression_system_taxid: 37965

Molecule: Human Thyroid Stimulating Autoantibody M22 Heavy
Chain: B
Fragment: Fab Fragment Heavy Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Mouse-Human Heterohybridoma Cell Line
Expression_system_taxid: 37965

Molecule: Thyrotropin Receptor
Chain: C
Fragment: Leucine Rich Repeat Domain (Segment 22-260)
Synonym: Thyroid-Stimulating Hormone Receptor, Tsh-R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tshr
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: High Five
Expression_system_vector_type: Baculovirus
symmetry Space Group: I 21 21 21
R_factor 0.181 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.888 175.784 205.806 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand NAG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceCrystal structure of the TSH receptor in complex with a thyroid-stimulating autoantibody., Sanders J, Chirgadze DY, Sanders P, Baker S, Sullivan A, Bhardwaja A, Bolton J, Reeve M, Nakatake N, Evans M, Richards T, Powell M, Miguel RN, Blundell TL, Furmaniak J, Smith BR, Thyroid. 2007 May;17(5):395-410. PMID:17542669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3g04.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3G04
  • CSU: Contacts of Structural Units for 3G04
  • Structure Factors (405 Kb)
  • Retrieve 3G04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G04 from S2C, [Save to disk]
  • Re-refined 3g04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G04
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G04, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g04_C] [3g04_A] [3g04_B] [3g04]
  • SWISS-PROT database: [P16473]
  • Domain organization of [TSHR_HUMAN] by SWISSPFAM
  • Domains found in 3G04: [IG_like] [IGv ] by SMART
  • Other resources with information on 3G04
  • Community annotation for 3G04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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