3G0I Hydrolase date Jan 28, 2009
title Complex Of Aspergillus Niger Epoxide Hydrolase With Valpromi Propylpentanamide)
authors J.Zou, S.L.Mowbray
compound source
Molecule: Epoxide Hydrolase
Chain: A, B
Fragment: Unp Residues 5-396
Ec: 3.3.2.9
Engineered: Yes
Organism_scientific: Aspergillus Niger
Organism_taxid: 5061
Strain: Lcp521
Gene: Hyl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgef-Aneh336
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.985 89.655 75.812 90.00 105.31 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand VPR enzyme Hydrolase E.C.3.3.2.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDirected evolution of an enantioselective epoxide hydrolase: uncovering the source of enantioselectivity at each evolutionary stage., Reetz MT, Bocola M, Wang LW, Sanchis J, Cronin A, Arand M, Zou J, Archelas A, Bottalla AL, Naworyta A, Mowbray SL, J Am Chem Soc. 2009 Jun 3;131(21):7334-43. PMID:19469578
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3g0i.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 3G0I
  • CSU: Contacts of Structural Units for 3G0I
  • Likely Quarternary Molecular Structure file(s) for 3G0I
  • Structure Factors (712 Kb)
  • Retrieve 3G0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G0I from S2C, [Save to disk]
  • Re-refined 3g0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G0I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G0I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g0i_A] [3g0i_B] [3g0i]
  • SWISS-PROT database: [Q9UR30]
  • Domain organization of [Q9UR30_ASPNG] by SWISSPFAM
  • Other resources with information on 3G0I
  • Community annotation for 3G0I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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