3G0J Transcription date Jan 28, 2009
title Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bro Containing Protein 1 (Pb1)
authors P.Filippakopoulos, T.Keates, S.Picaud, F.Von Delft, C.H.Arrowsmi A.M.Edwards, J.Weigelt, C.Bountra, S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Protein Polybromo-1
Chain: A, B
Fragment: Unp Residues 645-766
Synonym: Hpb1, Polybromo-1d, Brg1-Associated Factor 180, Ba
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pbrm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 2 21 21
R_factor 0.190 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.570 57.370 137.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand EDO, NO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3g0j.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3g0j.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3G0J
  • CSU: Contacts of Structural Units for 3G0J
  • Likely Quarternary Molecular Structure file(s) for 3G0J
  • Structure Factors (416 Kb)
  • Retrieve 3G0J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G0J from S2C, [Save to disk]
  • Re-refined 3g0j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G0J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G0J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G0J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g0j] [3g0j_A] [3g0j_B]
  • SWISS-PROT database: [Q86U86]
  • Domain organization of [PB1_HUMAN] by SWISSPFAM
  • Domain found in 3G0J: [BROMO ] by SMART
  • Other resources with information on 3G0J
  • Community annotation for 3G0J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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