3G12	Lyase	date	Jan 29, 2009
title	Crystal Structure Of A Putative Lactoylglutathione Lyase Fro Bdellovibrio Bacteriovorus
authors	Y.Patskovsky, M.Madegowda, M.Gilmore, S.Chang, M.Maletic, D.Smith J.M.Sauder, S.K.Burley, S.Swaminathan, S.C.Almo, New York Sgx R Center For Structural Genomics (Nysgxrc)
compound		source
Molecule: Putative Lactoylglutathione Lyase Chain: A, B Engineered: Yes		Organism_scientific: Bdellovibrio Bacteriovorus Hd100 Organism_taxid: 264462 Strain: Hd100 Dsm 50701 Ncib 9529 Atcc: 15356 Gene: Bd2520 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: P 43 21 2	R_factor 0.212 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.276 91.276 57.711 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.58 Å
ligand	SO4	enzyme
note	3G12 is a representative structure
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (3g12.pdb1.gz) 36 Kb LPC: Ligand-Protein Contacts for 3G12 CSU: Contacts of Structural Units for 3G12 Likely Quarternary Molecular Structure file(s) for 3G12 Structure Factors (164 Kb) Retrieve 3G12 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3G12 from S2C, [Save to disk] Re-refined 3g12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3G12 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3G12

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3G12, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3g12] [3g12_A] [3g12_B] SWISS-PROT database: [Q6MK89] Domain organization of [Q6MK89_BDEBA] by SWISSPFAM

Other resources with information on 3G12

Community annotation for 3G12 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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