3G1E Structural Protein date Jan 29, 2009
title X-Ray Crystal Structure Of Coil 1a Of Human Vimentin
authors M.Meier, G.P.Padilla, H.Herrmann, T.Wedig, M.Hergt, T.R.Patel, J.S U.Aebi, P.Burkhard
compound source
Molecule: Vimentin
Chain: A, B
Fragment: Coil 1a
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: Residue 102 To 138 From Human Vimentin Chemi Synthesized With An N-Terminal Acetyl And A C-Terminal Amid
symmetry Space Group: P 41 21 2
R_factor 0.253 R_Free 0.295
length a length b length c angle alpha angle beta angle gamma
35.496 35.496 108.022 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand ACE, NH2 enzyme
A, B

Primary referenceVimentin coil 1A-A molecular switch involved in the initiation of filament elongation., Meier M, Padilla GP, Herrmann H, Wedig T, Hergt M, Patel TR, Stetefeld J, Aebi U, Burkhard P, J Mol Biol. 2009 Jul 10;390(2):245-61. Epub 2009 May 5. PMID:19422834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (3g1e.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 3G1E
  • CSU: Contacts of Structural Units for 3G1E
  • Likely Quarternary Molecular Structure file(s) for 3G1E
  • Structure Factors (795 Kb)
  • Retrieve 3G1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G1E from S2C, [Save to disk]
  • Re-refined 3g1e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G1E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G1E, from MSDmotif at EBI
  • Fold representative 3g1e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g1e_A] [3g1e] [3g1e_B]
  • SWISS-PROT database: [P08670]
  • Domain organization of [VIME_HUMAN] by SWISSPFAM
  • Other resources with information on 3G1E
  • Community annotation for 3G1E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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