3G2T Protein Transport date Feb 01, 2009
title Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal Phosphopeptide
authors J.F.Cramer, M.A.Behrens, C.Gustafsen, C.L.P.Oliveira, J.S.Peders P.Madsen, C.M.Petersen, S.S.Thirup
compound source
Molecule: Adp-Ribosylation Factor-Binding Protein Gga1
Chain: A, B
Fragment: Vhs Domain (N-Terminal Domain)
Synonym: Golgi-Localized, Gamma Ear-Containing, Arf-Binding 1, Gamma-Adaptin-Related Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1

Molecule: Phosphorylated C-Terminal Fragment Of Sortilin-Re Receptor;
Chain: C, D
Synonym: Sorting Protein-Related Receptor Containing Ldlr C Repeats, Sorla, Sorla-1, Low-Density Lipoprotein Receptor R With 11 Ligand-Binding Repeats, Ldlr Relative With 11 Ligan Repeats, Lr11;
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.800 68.300 100.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand IOD, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceGGA Autoinhibition Revisited., Cramer JF, Gustafsen C, Behrens MA, Oliveira CL, Pedersen JS, Madsen P, Petersen CM, Thirup SS, Traffic. 2010 Feb;11(2):259-73. Epub 2009 Nov 10. PMID:20015111
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (3g2t.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3g2t.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3G2T
  • CSU: Contacts of Structural Units for 3G2T
  • Structure Factors (198 Kb)
  • Retrieve 3G2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G2T from S2C, [Save to disk]
  • Re-refined 3g2t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G2T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G2T, from MSDmotif at EBI
  • Fold representative 3g2t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g2t] [3g2t_C] [3g2t_A] [3g2t_B] [3g2t_D]
  • SWISS-PROT database: [Q9UJY5] [Q92673]
  • Domain organization of [GGA1_HUMAN] [SORL_HUMAN] by SWISSPFAM
  • Domain found in 3G2T: [VHS ] by SMART
  • Other resources with information on 3G2T
  • Community annotation for 3G2T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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