3G42 Hydrolase date Feb 03, 2009
title Crystal Structure Of Tace With Tryptophan Sulfonamide Derivative Inhibitor
authors W.Xu, Park K., A.Gopalsamy, A.Aplasca, Y.H.Zhang, J.I.Levin
compound source
Molecule: Adam 17
Chain: A, B, C, D
Fragment: Catalytic Domain
Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like Protease;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Cho Cell Lines
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.846 51.330 132.741 90.00 102.64 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 792, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary referenceSynthesis and activity of tryptophan sulfonamide derivatives as novel non-hydroxamate TNF-alpha converting enzyme (TACE) inhibitors., Park K, Gopalsamy A, Aplasca A, Ellingboe JW, Xu W, Zhang Y, Levin JI, Bioorg Med Chem. 2009 Jun 1;17(11):3857-65. Epub 2009 Apr 22. PMID:19410464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3g42.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3g42.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3g42.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (3g42.pdb4.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3G42
  • CSU: Contacts of Structural Units for 3G42
  • Likely Quarternary Molecular Structure file(s) for 3G42
  • Structure Factors (428 Kb)
  • Retrieve 3G42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G42 from S2C, [Save to disk]
  • Re-refined 3g42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G42
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G42, from MSDmotif at EBI
  • Fold representative 3g42 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g42_C] [3g42_A] [3g42_D] [3g42_B] [3g42]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 3G42 with the sequences similar proteins can be viewed for 3G42's classification [ADA17_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ADA17_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3G42
  • Community annotation for 3G42 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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