3G6D Immune System date Feb 06, 2009
title Crystal Structure Of The Complex Between Cnto607 Fab And Il-
authors A.Teplyakov, G.Obmolova, G.L.Gilliland
compound source
Molecule: Cnto607 Fab Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Expression_system_organ: Kidney
Expression_system_cell: Human Embryonic Kidney 293 Cells

Molecule: Cnto607 Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Expression_system_organ: Kidney
Expression_system_cell: Human Embryonic Kidney 293 Cells

Molecule: Interleukin-13
Chain: A
Fragment: Unp Residues 21-132
Synonym: Il-13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il13, Nc30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.540 68.030 182.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity


  • Primary referenceEpitope Mapping of Anti-Interleukin-13 Neutralizing Antibody CNTO607., Teplyakov A, Obmolova G, Wu SJ, Luo J, Kang J, O'Neil K, Gilliland GL, J Mol Biol. 2009 Apr 8. PMID:19361524
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3g6d.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (3g6d.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3G6D
  • CSU: Contacts of Structural Units for 3G6D
  • Likely Quarternary Molecular Structure file(s) for 3G6D
  • Structure Factors (127 Kb)
  • Retrieve 3G6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G6D from S2C, [Save to disk]
  • Re-refined 3g6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G6D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G6D, from MSDmotif at EBI
  • Fold representative 3g6d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g6d_A] [3g6d_L] [3g6d] [3g6d_H]
  • SWISS-PROT database: [P35225]
  • Domain organization of [IL13_HUMAN] by SWISSPFAM
  • Domains found in 3G6D: [IGc1] [IGv] [IL4_13 ] by SMART
  • Other resources with information on 3G6D
  • Community annotation for 3G6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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