3G7S Ligase date Feb 10, 2009
title Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fad Archaeoglobus Fulgidus
authors K.Palani, D.Kumaran, S.K.Burley, S.Swaminathan, New York Sgx Res Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Long-Chain-Fatty-Acid--Coa Ligase (Fadd-1)
Chain: A, B
Engineered: Yes
Organism_scientific: Archaeoglobus Fulgidus Dsm 4304
Organism_taxid: 224325
Strain: Vc-16 Dsm 4304 Jcm 9628 Nbrc 100126
Atcc: 49558
Gene: Af_0089
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.038 105.070 182.295 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand MSE enzyme
Gene AF
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (3g7s.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 3G7S
  • CSU: Contacts of Structural Units for 3G7S
  • Likely Quarternary Molecular Structure file(s) for 3G7S
  • Structure Factors (397 Kb)
  • Retrieve 3G7S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G7S from S2C, [Save to disk]
  • Re-refined 3g7s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G7S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G7S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G7S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g7s_B] [3g7s_A] [3g7s]
  • SWISS-PROT database: [O30147]
  • Domain organization of [O30147_ARCFU] by SWISSPFAM
  • Other resources with information on 3G7S
  • Community annotation for 3G7S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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