3G8S Rna Binding Protein Rna date Feb 12, 2009
title Crystal Structure Of The Pre-Cleaved Bacillus Anthracis Glms
authors S.A.Strobel, J.C.Cochrane, S.V.Lipchock, K.D.Smith
compound source
Molecule: U1 Small Nuclear Ribonucleoprotein A
Chain: A, B, C, D
Fragment: Rna Binding Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snrpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11

Molecule: Rna (5'-R(Ap(A2m)Pgpcpgpcpcpapgpapapc
Chain: E, F, G, H
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: Glms Ribozyme
Chain: P, Q, R, S
Engineered: Yes

Synthetic: Yes
Other_details: In Vitro Transcribed From A Dna Template
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.364 228.480 103.915 90.00 90.58 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand A2M, GTP, MG enzyme
Primary referenceStructural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme., Cochrane JC, Lipchock SV, Smith KD, Strobel SA, Biochemistry. 2009 Apr 21;48(15):3239-46. PMID:19228039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (3g8s.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (3g8s.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (3g8s.pdb3.gz) 80 Kb
  • Biological Unit Coordinates (3g8s.pdb4.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3G8S
  • CSU: Contacts of Structural Units for 3G8S
  • Structure Factors (558 Kb)
  • Retrieve 3G8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G8S from S2C, [Save to disk]
  • Re-refined 3g8s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G8S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G8S, from MSDmotif at EBI
  • Fold representative 3g8s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g8s_A] [3g8s_R] [3g8s_B] [3g8s_C] [3g8s_G] [3g8s_F] [3g8s_S] [3g8s_E] [3g8s] [3g8s_H] [3g8s_P] [3g8s_Q] [3g8s_D]
  • SWISS-PROT database: [P09012]
  • Domain organization of [SNRPA_HUMAN] by SWISSPFAM
  • Domain found in 3G8S: [RRM ] by SMART
  • Alignments of the sequence of 3G8S with the sequences similar proteins can be viewed for 3G8S's classification [SNRPA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SNRPA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3G8S
  • Community annotation for 3G8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science