3G91 Hydrolase date Feb 12, 2009
title 1.2 Angstrom Structure Of The Exonuclease III Homologue Mth0
authors K.Lakomek, A.Dickmanns, R.Ficner
compound source
Molecule: Exodeoxyribonuclease
Chain: A
Synonym: Mth0212
Ec: 3.1.11.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 187420
Strain: Delta H (Dsm 1053)
Gene: Mth0212, Mth212, Mth_212
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21_ux
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet_b_001-Mth212 (K116a)
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.330 72.110 46.330 90.00 117.96 90.00
method X-Ray Diffractionresolution 1.23 Å
ligand GOL, MG, PEG, PG4, PO4 enzyme Hydrolase E.C.3.1.11.2 BRENDA
note 3G91 is a representative structure
Gene MTH
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Primary referenceCrystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA., Lakomek K, Dickmanns A, Ciirdaeva E, Schomacher L, Ficner R, J Mol Biol. 2010 Apr 29. PMID:20434457
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (3g91.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 3G91
  • CSU: Contacts of Structural Units for 3G91
  • Structure Factors (1693 Kb)
  • Retrieve 3G91 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G91 from S2C, [Save to disk]
  • Re-refined 3g91 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G91 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G91
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G91, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g91_A] [3g91]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3G91
  • Community annotation for 3G91 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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