3GDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component C, D, A, B
Primary reference	Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: evidence for substrate destabilization., Chan KK, Wood BM, Fedorov AA, Fedorov EV, Imker HJ, Amyes TL, Richard JP, Almo SC, Gerlt JA, Biochemistry. 2009 Jun 23;48(24):5518-31. PMID:19435314

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (3gdk.pdb1.gz) 82 Kb Biological Unit Coordinates (3gdk.pdb2.gz) 82 Kb CSU: Contacts of Structural Units for 3GDK Likely Quarternary Molecular Structure file(s) for 3GDK Structure Factors (1073 Kb) Retrieve 3GDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GDK from S2C, [Save to disk] Re-refined 3gdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gdk] [3gdk_A] [3gdk_B] [3gdk_C] [3gdk_D] SWISS-PROT database: [P03962] Domain found in 3GDK: [OMPdecase ] by SMART

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