3GEN	Transferase	date	Feb 25, 2009
title	The 1.6 A Crystal Structure Of Human Bruton'S Tyrosine Kinas A Pyrrolopyrimidine-Containing Compound
authors	D.J.Marcotte, Y.T.Liu, R.M.Arduini, C.A.Hession, K.Miatkowski, C. P.F.Cullen, B.Hopkins, E.Mertsching, T.J.Jenkins, M.J.Romanowsk D.P.Baker, L.F.Silvian
compound		source
Molecule: Tyrosine-Protein Kinase Btk Chain: A Fragment: Protein Kinase, Residues 382-659 Synonym: Bruton Tyrosine Kinase, Agammaglobulinaemia Tyrosi Atk, B-Cell Progenitor Kinase, Bpk; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Agmx1, Atk, Bpk, Btk Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_plasmid: Pdest20
symmetry	Space Group: P 21 21 2	R_factor 0.193 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.497 104.306 38.039 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	B43	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of human Bruton's tyrosine kinase in active and inactive conformations suggest a mechanism of activation for tec family kinases., Marcotte DJ, Liu YT, Arduini RM, Hession CA, Miatkowski K, Wildes CP, Cullen PF, Hong V, Hopkins BT, Mertsching E, Jenkins TJ, Romanowski MJ, Baker DP, Silvian LF, Protein Sci. 2010 Jan 5. PMID:20052711

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (3gen.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 3GEN CSU: Contacts of Structural Units for 3GEN Structure Factors (532 Kb) Retrieve 3GEN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GEN from S2C, [Save to disk] Re-refined 3gen structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GEN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GEN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GEN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gen_A] [3gen] SWISS-PROT database: [Q06187] Domain organization of [BTK_HUMAN] by SWISSPFAM Domain found in 3GEN: [TyrKc ] by SMART

Other resources with information on 3GEN

Community annotation for 3GEN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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