3GG6 Hydrolase date Feb 27, 2009
title Crystal Structure Of The Nudix Domain Of Human Nudt18
authors L.Tresaugues, M.I.Siponen, L.Lehtio, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Collins, L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flo S.Graslund, M.Hammarstrom, A.Johansson, I.Johansson, T.Karlberg T.Kotenyova, M.Moche, M.E.Nilsson, T.Nyman, C.Persson, J.Sagemar H.Schueler, A.G.Thorsell, S.Van Den Berg, J.Weigelt, M.Welin, M.Wisniewska, P.Nordlund, Structural Genomics Consortium (Sgc
compound source
Molecule: Nucleoside Diphosphate-Linked Moiety X Motif 18
Chain: A
Fragment: Nudix Hydrolase Domain
Synonym: Nudix Motif 18
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt18
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.660 60.130 76.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3gg6.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 3GG6
  • Likely Quarternary Molecular Structure file(s) for 3GG6
  • Structure Factors (132 Kb)
  • Retrieve 3GG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GG6 from S2C, [Save to disk]
  • Re-refined 3gg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GG6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GG6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gg6_A] [3gg6]
  • SWISS-PROT database: [Q6ZVK8]
  • Domain organization of [NUD18_HUMAN] by SWISSPFAM
  • Other resources with information on 3GG6
  • Community annotation for 3GG6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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