3GI9	Transport Protein	date	Mar 05, 2009
title	Crystal Structure Of Apct Transporter Bound To 7f11 Monoclon Fragment
authors	P.L.Shaffer, A.S.Goehring, A.Shankaranarayanan, E.Gouaux, New Yo Consortium On Membrane Protein Structure (Nycomps)
compound		source
Molecule: 7f11 Anti-Apct Monoclonal Fab Light Chain Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Strain: Murine Hybridoma Expression_system: Mus Musculus Expression_system_taxid: 10090
Molecule: 7f11 Anti-Apct Monoclonal Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Strain: Murine Hybridoma Expression_system: Mus Musculus Expression_system_taxid: 10090
Molecule: Uncharacterized Protein Mj0609 Chain: C Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_common: Methanococcus Jannaschii Organism_taxid: 2190 Gene: Mj0609 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet25b
symmetry	Space Group: C 1 2 1	R_factor 0.248 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.365 45.900 158.088 90.00 97.75 90.00
method	X-Ray Diffraction	resolution	2.48 Å
Gene Ontology	Chain Function Process Component C
Primary reference	Structure and Mechanism of a Na+ Independent Amino Acid Transporter., Shaffer PL, Goehring A, Shankaranarayanan A, Gouaux E, Science. 2009 Jul 22. PMID:19608859

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk] Biological Unit Coordinates (3gi9.pdb1.gz) 137 Kb CSU: Contacts of Structural Units for 3GI9 Structure Factors (267 Kb) Retrieve 3GI9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GI9 from S2C, [Save to disk] Re-refined 3gi9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GI9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GI9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GI9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gi9] [3gi9_C] [3gi9_L] [3gi9_H] SWISS-PROT database: [Q58026] Belongs to the amino acid-polyamine-organocation (apc) family according to TCDB. Domain organization of [Y609_METJA] by SWISSPFAM Domains found in 3GI9: [IG_like] [IGv ] by SMART

Other resources with information on 3GI9

Community annotation for 3GI9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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