3GKF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, P, K, M, H, T, S, Q, R, N, C, I, G, E, L, J, O, B, F, D


Primary referenceThe crystal structure of the Escherichia coli autoinducer-2 processing protein LsrF., Diaz Z, Xavier KB, Miller ST, PLoS One. 2009 Aug 28;4(8):e6820. PMID:19714241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (841 Kb) [Save to disk]
  • Biological Unit Coordinates (3gkf.pdb1.gz) 419 Kb
  • Biological Unit Coordinates (3gkf.pdb2.gz) 421 Kb
  • CSU: Contacts of Structural Units for 3GKF
  • Structure Factors (904 Kb)
  • Retrieve 3GKF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GKF from S2C, [Save to disk]
  • Re-refined 3gkf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GKF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gkf] [3gkf_A] [3gkf_B] [3gkf_C] [3gkf_D] [3gkf_E] [3gkf_F] [3gkf_G] [3gkf_H] [3gkf_I] [3gkf_J] [3gkf_K] [3gkf_L] [3gkf_M] [3gkf_N] [3gkf_O] [3gkf_P] [3gkf_Q] [3gkf_R] [3gkf_S] [3gkf_T]
  • SWISS-PROT database: [P76143]
  • Domain found in 3GKF: [DeoC ] by SMART

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