3GKN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BIH, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A
  • peroxidase activity
  • thioredoxin peroxidase activ...
  • antioxidant activity


  • Primary referenceInsights into the Oxidoreduction Activity of Xanthomonas campestris Bacterioferritin Comigratory Protein from the Trapped Intermediate-Ligand Complex Structures., Liao SJ, Yang CY, Chin KH, Wang AH, Chou SH, J Mol Biol. 2009 May 25. PMID:19477183
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3gkn.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (3gkn.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3GKN
  • CSU: Contacts of Structural Units for 3GKN
  • Likely Quarternary Molecular Structure file(s) for 3GKN
  • Structure Factors (829 Kb)
  • Retrieve 3GKN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GKN from S2C, [Save to disk]
  • Re-refined 3gkn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GKN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GKN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GKN, from MSDmotif at EBI
  • Fold representative 3gkn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gkn] [3gkn_A] [3gkn_B]
  • SWISS-PROT database: [Q8P9V9]
  • Domain organization of [Q8P9V9_XANCP] by SWISSPFAM
  • Other resources with information on 3GKN
  • Community annotation for 3GKN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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