3GKQ Oxidoreductase date Mar 11, 2009
title Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosp Sp. Ka1
authors T.Umeda, H.Nojiri
compound source
Molecule: Terminal Oxygenase Component Of Carbazole 1,9a-Di
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Sphingomonas
Organism_taxid: 164608
Strain: Ka1
Gene: Caraaii
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.436
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.147 159.019 167.774 90.00 94.45 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FE2, FES enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]
  • Biological Unit Coordinates (3gkq.pdb1.gz) 205 Kb
  • Biological Unit Coordinates (3gkq.pdb2.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 3GKQ
  • CSU: Contacts of Structural Units for 3GKQ
  • Structure Factors (5283 Kb)
  • Retrieve 3GKQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GKQ from S2C, [Save to disk]
  • Re-refined 3gkq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GKQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GKQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GKQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gkq] [3gkq_B] [3gkq_F] [3gkq_E] [3gkq_D] [3gkq_C] [3gkq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3GKQ
  • Community annotation for 3GKQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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