3GKY Hormone date Mar 11, 2009
title The Structural Basis Of An Er Stress-Associated Bottleneck I Protein Folding Landscape
authors M.Liu, Z.L.Wan, Y.C.Chu, H.Alddin, B.Klaproth, M.A.Weiss
compound source
Molecule: Insulin A Chain
Chain: A, C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Other_details: Biosynthetic Sequence

Molecule: Insulin B Chain
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Other_details: Biosynthetic Sequence
symmetry Space Group: H 3
R_factor 0.209 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.225 78.225 36.712 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, IPH, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structure of a "nonfoldable" insulin: IMPAIRED FOLDING EFFICIENCY DESPITE NATIVE ACTIVITY., Liu M, Wan ZL, Chu YC, Aladdin H, Klaproth B, Choquette M, Hua QX, Mackin RB, Rao JS, De Meyts P, Katsoyannis PG, Arvan P, Weiss MA, J Biol Chem. 2009 Dec 11;284(50):35259-72. Epub 2009 Oct 22. PMID:19850922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3gky.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3GKY
  • CSU: Contacts of Structural Units for 3GKY
  • Likely Quarternary Molecular Structure file(s) for 3GKY
  • Structure Factors (70 Kb)
  • Retrieve 3GKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GKY from S2C, [Save to disk]
  • Re-refined 3gky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GKY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GKY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gky_C] [3gky_D] [3gky_A] [3gky] [3gky_B]
  • SWISS-PROT database: [P01315]
  • Domain organization of [INS_PIG] by SWISSPFAM
  • Domain found in 3GKY: [IlGF ] by SMART
  • Other resources with information on 3GKY
  • Community annotation for 3GKY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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