3GLI	Transferase Dna	date	Mar 12, 2009
title	Crystal Structure Of The E. Coli Clamp Loader Bound To Prime Dna And Psi Peptide
authors	K.R.Simonetta, A.J.Cantor, J.Kuriyan
compound		source
Molecule: Dna Polymerase III Subunit Delta Chain: A, F Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Gene: Hola, B0640, Jw0635 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Polymerase III Subunit Tau Chain: B, C, D, G, H, I Fragment: Unp Residues 1-373 Synonym: Dna Polymerase III Subunit Gamma Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Gene: Dnax, Dnaz, Dnazx, B0470, Jw0459 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Polymerase III Subunit Delta' Chain: E, J Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 83333 Strain: K-12 Gene: Holb, B1099, Jw1085 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Tptptptptptpaptpapgpgpcpcp 3'); Chain: K, M Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cptpgpgpcpcptpaptpa)-3') Chain: L, N Engineered: Yes		Synthetic: Yes
Molecule: Dna Polymerase III Subunit Psi Chain: O, P Fragment: Unp Residues 2-28 Ec: 2.7.7.7 Engineered: Yes		Synthetic: Yes Organism_scientific: Escherichia Coli Organism_taxid: 83333
symmetry	Space Group: P 21 21 21	R_factor 0.222 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.690 217.180 275.320 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	ADP, BEF, MG, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
note	3GLI is a representative structure
Gene Ontology	Chain Function Process Component B, H, C, D, I, G F, A DNA-directed DNA polymerase ... J, E DNA-directed DNA polymerase ... 3'-5' exonuclease activity O, P
Primary reference	The mechanism of ATP-dependent primer-template recognition by a clamp loader complex., Simonetta KR, Kazmirski SL, Goedken ER, Cantor AJ, Kelch BA, McNally R, Seyedin SN, Makino DL, O'Donnell M, Kuriyan J, Cell. 2009 May 15;137(4):659-71. PMID:19450514

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1236 Kb) [Save to disk] Biological Unit Coordinates (3gli.pdb1.gz) 615 Kb Biological Unit Coordinates (3gli.pdb2.gz) 616 Kb LPC: Ligand-Protein Contacts for 3GLI CSU: Contacts of Structural Units for 3GLI Likely Quarternary Molecular Structure file(s) for 3GLI Structure Factors (595 Kb) Retrieve 3GLI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GLI from S2C, [Save to disk] Re-refined 3gli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GLI in 3D

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Visual 3D analysis of 3GLI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GLI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gli_J] [3gli_N] [3gli_C] [3gli_M] [3gli_H] [3gli_P] [3gli_A] [3gli_E] [3gli_K] [3gli_D] [3gli_B] [3gli_O] [3gli] [3gli_F] [3gli_L] [3gli_G] [3gli_I] SWISS-PROT database: [P06710] [P28630] [P28631] [P28632] Domain organization of [DPO3X_ECOLI] [HOLA_ECOLI] [HOLB_ECOLI] [HOLD_ECOLI] by SWISSPFAM Domain found in 3GLI: [AAA ] by SMART

Other resources with information on 3GLI

Community annotation for 3GLI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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