3GND		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	5RP	enzyme
Gene Ontology	Chain Function Process Component D, T, A, Q, F, B, S, H, P, C, N, J, R, K, E, L, I, G, O, M
Primary reference	The crystal structure of the Escherichia coli autoinducer-2 processing protein LsrF., Diaz Z, Xavier KB, Miller ST, PLoS One. 2009 Aug 28;4(8):e6820. PMID:19714241

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (853 Kb) [Save to disk] Biological Unit Coordinates (3gnd.pdb1.gz) 425 Kb Biological Unit Coordinates (3gnd.pdb2.gz) 426 Kb LPC: Ligand-Protein Contacts for 3GND CSU: Contacts of Structural Units for 3GND Structure Factors (1584 Kb) Retrieve 3GND in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GND from S2C, [Save to disk] Re-refined 3gnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GND in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gnd] [3gnd_A] [3gnd_B] [3gnd_C] [3gnd_D] [3gnd_E] [3gnd_F] [3gnd_G] [3gnd_H] [3gnd_I] [3gnd_J] [3gnd_K] [3gnd_L] [3gnd_M] [3gnd_N] [3gnd_O] [3gnd_P] [3gnd_Q] [3gnd_R] [3gnd_S] [3gnd_T] SWISS-PROT database: [P76143] Domain found in 3GND: [DeoC ] by SMART

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