3GOI Transferase date Mar 19, 2009
title Human Glucokinase In Complex With A Synthetic Activator
authors K.Kamata, M.Mitsuya
compound source
Molecule: Glucokinase
Chain: A
Fragment: Unp Residues 12-466
Synonym: Glucokinase (Hexokinase 4, Maturity Onset Diabetes Young 2);
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gck, Hcg_1745191, Tcag7.801
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alfa
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pflag-Ctc
symmetry Space Group: P 65 2 2
R_factor 0.205 R_Free 0.282
length a length b length c angle alpha angle beta angle gamma
80.085 80.085 323.974 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.52 Å
ligand GLC, LOI BindingDB enzyme Transferase E.C. BRENDA
Gene HCG

Primary referenceDiscovery of novel 3,6-disubstituted 2-pyridinecarboxamide derivatives as GK activators., Mitsuya M, Kamata K, Bamba M, Watanabe H, Sasaki Y, Sasaki K, Ohyama S, Hosaka H, Nagata Y, Eiki JI, Nishimura T, Bioorg Med Chem Lett. 2009 Mar 29. PMID:19362831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3goi.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3GOI
  • CSU: Contacts of Structural Units for 3GOI
  • Likely Quarternary Molecular Structure file(s) for 3GOI
  • Structure Factors (331 Kb)
  • Retrieve 3GOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GOI from S2C, [Save to disk]
  • Re-refined 3goi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GOI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GOI, from MSDmotif at EBI
  • Fold representative 3goi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3goi_A] [3goi]
  • SWISS-PROT database: [P35557]
  • Domain organization of [HXK4_HUMAN] by SWISSPFAM
  • Other resources with information on 3GOI
  • Community annotation for 3GOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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