3GQL Transferase Transferase Inhibitor date Mar 24, 2009
title Crystal Structure Of Activated Receptor Tyrosine Kinase In C With Substrates
authors J.H.Bae, E.D.Lew, S.Yuzawa, F.Tome, I.Lax, J.Schlessinger
compound source
Molecule: Basic Fibroblast Growth Factor Receptor 1
Chain: A, B, C
Fragment: Protein Kinase Domain
Synonym: Fgfr-1, Bfgf-R, Fms-Like Tyrosine Kinase 2, C-Fgr
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfbr, Fgfr1, Flg, Flt2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.252 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
194.168 78.265 98.458 90.00 110.55 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand GQL enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe selectivity of receptor tyrosine kinase signaling is controlled by a secondary SH2 domain binding site., Bae JH, Lew ED, Yuzawa S, Tome F, Lax I, Schlessinger J, Cell. 2009 Aug 7;138(3):514-24. PMID:19665973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3gql.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (3gql.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3gql.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (3gql.pdb4.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3GQL
  • CSU: Contacts of Structural Units for 3GQL
  • Structure Factors (260 Kb)
  • Retrieve 3GQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GQL from S2C, [Save to disk]
  • Re-refined 3gql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GQL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GQL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gql_A] [3gql] [3gql_C] [3gql_B]
  • SWISS-PROT database: [P11362]
  • Belongs to the basigin (basigin) family according to TCDB.
  • Domain organization of [FGFR1_HUMAN] by SWISSPFAM
  • Domain found in 3GQL: [TyrKc ] by SMART
    • Other resources with information on 3GQL
  • Community annotation for 3GQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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