3GT5 Isomerase date Mar 27, 2009
title Crystal Structure Of An N-Acetylglucosamine 2-Epimerase Fami From Xylella Fastidiosa
authors J.B.Bonanno, M.Rutter, K.T.Bain, M.Iizuka, R.Romero, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: N-Acetylglucosamine 2-Epimerase
Chain: A
Fragment: Unp Residues 11-401
Engineered: Yes
 Organism_scientific: Xylella Fastidiosa
Organism_taxid: 405441
Strain: M23
Gene: Xfasm23_1239
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.401 72.052 99.606 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL enzyme
Gene XFASM23
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3gt5.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3GT5
  • CSU: Contacts of Structural Units for 3GT5
  • Likely Quarternary Molecular Structure file(s) for 3GT5
  • Structure Factors (2343 Kb)
  • Retrieve 3GT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GT5 from S2C, [Save to disk]
  • Re-refined 3gt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GT5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GT5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gt5] [3gt5_A]
  • SWISS-PROT database: [B2I5L9]
  • Domain organization of [B2I5L9_XYLF2] by SWISSPFAM
    • Other resources with information on 3GT5
  • Community annotation for 3GT5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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