3GUG Oxidoreductase date Mar 30, 2009
title Crystal Structure Of Akr1c1 L308v Mutant In Complex With Nadp And 3,5-Dichlorosalicylic Acid
authors U.Dhagat, O.El-Kabbani
compound source
Molecule: Aldo-Keto Reductase Family 1 Member C1
Chain: A
Synonym: 20-Alpha-Hydroxysteroid Dehydrogenase, 20-Alpha- Hsd;
Ec: 1.1.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1c1, Ddh, Ddh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3, Pkkdd1
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.412 83.885 48.914 90.00 90.98 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand C2U, NAP, ZN BindingDB enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3gug.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3GUG
  • CSU: Contacts of Structural Units for 3GUG
  • Structure Factors (361 Kb)
  • Retrieve 3GUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GUG from S2C, [Save to disk]
  • Re-refined 3gug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GUG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GUG, from MSDmotif at EBI
  • Fold representative 3gug from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gug] [3gug_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3GUG
  • Community annotation for 3GUG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science