3GVU Transferase date Mar 31, 2009
title The Crystal Structure Of Human Abl2 In Complex With Gleevec
authors E.Ugochukwu, E.Salah, A.Barr, P.Mahajan, B.Shrestha, P.Savitsky, A.Chaikuad, P.Filippakopoulos, A.Roos, A.C.W.Pike, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, S.Knapp, Struct Genomics Consortium (Sgc)
compound source
Molecule: Tyrosine-Protein Kinase Abl2
Chain: A
Fragment: Protein Kinase
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 2, Related Gene Protein, Tyrosine Kinase Arg;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High5 Insect Cell
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.226
length a length b length c angle alpha angle beta angle gamma
88.460 99.440 87.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand STI BindingDB enzyme Transferase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3gvu.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3gvu.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3GVU
  • CSU: Contacts of Structural Units for 3GVU
  • Likely Quarternary Molecular Structure file(s) for 3GVU
  • Structure Factors (381 Kb)
  • Retrieve 3GVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GVU from S2C, [Save to disk]
  • Re-refined 3gvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GVU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GVU, from MSDmotif at EBI
  • Fold representative 3gvu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gvu_A] [3gvu]
  • SWISS-PROT database: [P42684]
  • Domain organization of [ABL2_HUMAN] by SWISSPFAM
  • Domain found in 3GVU: [TyrKc ] by SMART
  • Other resources with information on 3GVU
  • Community annotation for 3GVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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