3GWL Oxidoreductase date Apr 01, 2009
title Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl Oxidase
authors M.Hakim, D.Fass
compound source
Molecule: Fad-Linked Sulfhydryl Oxidase
Chain: A, B
Fragment: Unp Residues 1-103
Synonym: P14
Ec: 1.8.3.2
Engineered: Yes
Organism_scientific: African Swine Fever Virus Ba71v
Organism_common: Asfv
Organism_taxid: 10498
Strain: Badajoz 1971 Vero-Adapted, Ba71v
Gene: 9gl, B119l, Ba71v-073
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.450 69.000 83.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FAD enzyme Oxidoreductase E.C.1.8.3.2 BRENDA
note 3GWL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDimer interface migration in a viral sulfhydryl oxidase., Hakim M, Fass D, J Mol Biol. 2009 Aug 28;391(4):758-68. Epub 2009 Jul 2. PMID:19576902
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3gwl.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3GWL
  • CSU: Contacts of Structural Units for 3GWL
  • Likely Quarternary Molecular Structure file(s) for 3GWL
  • Structure Factors (129 Kb)
  • Retrieve 3GWL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GWL from S2C, [Save to disk]
  • Re-refined 3gwl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GWL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GWL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GWL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gwl] [3gwl_B] [3gwl_A]
  • SWISS-PROT database: [Q65163]
  • Domain organization of [FLSO_ASFB7] by SWISSPFAM
  • Other resources with information on 3GWL
  • Community annotation for 3GWL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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