3GXL Transferase date Apr 02, 2009
title Alk-5 Kinase Complex With Gw857175
authors W.Smith, C.Janson
compound source
Molecule: Tgf-Beta Receptor Type-1
Chain: A
Fragment: Kinase Domain, Residues 201-503
Synonym: Transforming Growth Factor-Beta Receptor Type I, Tgf-Beta Receptor Type I, Tgf-Beta Type I Receptor, Tbetar- I, Tgfr-1, Serinethreonine-Protein Kinase Receptor R4, Skr4, Activin Receptor-Like Kinase 5, Alk-5;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.839 74.618 89.652 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand QIG BindingDB enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of novel quinazoline derivatives and related analogues as potent and selective ALK5 inhibitors., Gellibert F, Fouchet MH, Nguyen VL, Wang R, Krysa G, de Gouville AC, Huet S, Dodic N, Bioorg Med Chem Lett. 2009 Apr 15;19(8):2277-81. Epub 2009 Feb 26. PMID:19285388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3gxl.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3GXL
  • CSU: Contacts of Structural Units for 3GXL
  • Likely Quarternary Molecular Structure file(s) for 3GXL
  • Structure Factors (224 Kb)
  • Retrieve 3GXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GXL from S2C, [Save to disk]
  • Re-refined 3gxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GXL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GXL, from MSDmotif at EBI
  • Fold representative 3gxl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gxl_A] [3gxl]
  • SWISS-PROT database: [P36897]
  • Domain organization of [TGFR1_HUMAN] by SWISSPFAM
  • Domain found in 3GXL: [STYKc ] by SMART
  • Alignments of the sequence of 3GXL with the sequences similar proteins can be viewed for 3GXL's classification [TGFR1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TGFR1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3GXL
  • Community annotation for 3GXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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