3GZJ Hydrolase date Apr 07, 2009
title Crystal Structure Of Polyneuridine Aldehyde Esterase Complex 16-Epi-Vellosimine
authors L.Yang, M.Hill, M.Wang, S.Panjikar, J.Stoeckigt
compound source
Molecule: Polyneuridine-Aldehyde Esterase
Chain: A, B, C, D, E
Ec: 3.1.1.78
Engineered: Yes
Mutation: Yes
Organism_scientific: Rauvolfia Serpentina
Organism_common: Devilpepper
Organism_taxid: 4060
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prep4
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.210 44.610 180.410 90.00 104.44 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand EVS enzyme Hydrolase E.C.3.1.1.78 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceStructural basis and enzymatic mechanism of the biosynthesis of C9- from C10-monoterpenoid indole alkaloids., Yang L, Hill M, Wang M, Panjikar S, Stockigt J, Angew Chem Int Ed Engl. 2009;48(28):5211-3. PMID:19496101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (3gzj.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3gzj.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (3gzj.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (3gzj.pdb4.gz) 44 Kb
  • Biological Unit Coordinates (3gzj.pdb5.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3GZJ
  • CSU: Contacts of Structural Units for 3GZJ
  • Structure Factors (1028 Kb)
  • Retrieve 3GZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GZJ from S2C, [Save to disk]
  • Re-refined 3gzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GZJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GZJ, from MSDmotif at EBI
  • Fold representative 3gzj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gzj_E] [3gzj_A] [3gzj_D] [3gzj_B] [3gzj_C] [3gzj]
  • SWISS-PROT database: [Q9SE93]
  • Domain organization of [PNAE_RAUSE] by SWISSPFAM
  • Other resources with information on 3GZJ
  • Community annotation for 3GZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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