3H0T	Immune System Antimicrobial Protein	date	Apr 10, 2009
title	Hepcidin-Fab Complex
authors	R.Syed, V.Li
compound		source
Molecule: Fab Fragment, Light Chain Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fab Fragment, Heavy Chain Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Hepcidin Chain: C Fragment: Unp Residues 60-84 Synonym: Liver-Expressed Antimicrobial Peptide, Leap-1, Put Liver Tumor Regressor, Pltr, Hepcidin-25, Hepc25, Hepcidin- Hepc20; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hamp, Hepc, Hepcidin, Leap1 Expression_system: Cricetulus Griseus Expression_system_taxid: 10029
symmetry	Space Group: C 1 2 1	R_factor 0.202 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 174.077 52.169 65.630 90.00 99.24 90.00
method	X-Ray Diffraction	resolution	1.89 Å
Gene Ontology	Chain Function Process Component C
Primary reference	Hepcidin revisited, disulfide connectivity, dynamics, and structure., Jordan JB, Poppe L, Haniu M, Arvedson T, Syed R, Li V, Kohno H, Kim H, Schnier PD, Harvey TS, Miranda LP, Cheetham J, Sasu BJ, J Biol Chem. 2009 Sep 4;284(36):24155-67. Epub 2009 Jun 24. PMID:19553669

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (3h0t.pdb1.gz) 151 Kb Biological Unit Coordinates (3h0t.pdb2.gz) 76 Kb CSU: Contacts of Structural Units for 3H0T Likely Quarternary Molecular Structure file(s) for 3H0T Structure Factors (348 Kb) Retrieve 3H0T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H0T from S2C, [Save to disk] Re-refined 3h0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H0T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H0T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H0T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h0t_B] [3h0t_C] [3h0t_A] [3h0t] SWISS-PROT database: [P81172] Belongs to the hepcidin (hepcidin) family according to TCDB. Domain organization of [HEPC_HUMAN] by SWISSPFAM Domains found in 3H0T: [IG_like] [IGv ] by SMART

Other resources with information on 3H0T

Community annotation for 3H0T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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