3H11 Apoptosis date Apr 10, 2009
title Zymogen Caspase-8:C-Flipl Protease Domain Complex
authors P.D.Jeffrey, J.W.Yu, Y.Shi
compound source
Molecule: Casp8 And Fadd-Like Apoptosis Regulator
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cflar, Cash, Casp8ap1, Clarp, Mrit
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b

Molecule: Caspase-8
Chain: B
Ec: 3.4.22.61
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp8, Mch5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Ietd Aldehyde Inhibitor
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.990 76.680 114.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ASA enzyme Hydrolase E.C.3.4.22.61 BRENDA
note 3H11 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMechanism of procaspase-8 activation by c-FLIPL., Yu JW, Jeffrey PD, Shi Y, Proc Natl Acad Sci U S A. 2009 May 4. PMID:19416807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3h11.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3H11
  • CSU: Contacts of Structural Units for 3H11
  • Likely Quarternary Molecular Structure file(s) for 3H11
  • Structure Factors (275 Kb)
  • Retrieve 3H11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H11 from S2C, [Save to disk]
  • Re-refined 3h11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H11
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H11, from MSDmotif at EBI
  • Fold representative 3h11 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h11_C] [3h11] [3h11_A] [3h11_B]
  • SWISS-PROT database: [Q14790] [O15519]
  • Domain organization of [CASP8_HUMAN] [CFLAR_HUMAN] by SWISSPFAM
  • Domain found in 3H11: [CASc ] by SMART
  • Other resources with information on 3H11
  • Community annotation for 3H11 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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