3H1L Oxidoreductase date Apr 12, 2009
title Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At Qo Sites
authors E.A.Berry, L.S.Huang, N.Minagawa
compound source
Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein I;
Chain: A, N
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein 2;
Chain: B, O
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B
Chain: C, P
Synonym: Ubiquinol-Cytochrome-C Reductase Complex Cytochrom Subunit, Cytochrome B-C1 Complex Subunit 3, Complex III Sub Complex III Subunit III;
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Cytochrome C1, Heme Protein
Chain: D, Q
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: E, R
Fragment: Sequence Database Residues 77-272
Synonym: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subun Iron-Sulfur Protein, Risp, Complex III Subunit 5;
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 14 Protein;
Chain: F, S
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase Ub Binding Protein Qp-C;
Chain: G, T
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 11 Protein, Complex III Subunit Viii;
Chain: H, U
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: I, V
Fragment: Sequence Database Residues 1-76
Synonym: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subun Iron-Sulfur Protein, Risp, Complex III Subunit 5;
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 7. Protein;
Chain: J, W
Ec: 1.10.2.2

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 21 21 21
R_factor 0.267 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.139 182.364 241.626 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.21 Å
ligand 3H1, BOG, CDL, FES, GOL, HEC, HEM, PEE, UNL enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A, O, B
  • ubiquinol-cytochrome-c reduc...


  • Q, D
  • ubiquinol-cytochrome-c reduc...
  • electron transfer activity


  • S, F


    T, G
  • ubiquinol-cytochrome-c reduc...


  • V, I


    Primary referenceAscochlorin is a novel, specific inhibitor of the mitochondrial cytochrome bc(1) complex., Berry EA, Huang LS, Lee DW, Daldal F, Nagai K, Minagawa N, Biochim Biophys Acta. 2009 Dec 16. PMID:20025846
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (674 Kb) [Save to disk]
  • Biological Unit Coordinates (3h1l.pdb1.gz) 660 Kb
  • LPC: Ligand-Protein Contacts for 3H1L
  • CSU: Contacts of Structural Units for 3H1L
  • Structure Factors (1067 Kb)
  • Retrieve 3H1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H1L from S2C, [Save to disk]
  • Re-refined 3h1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H1L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H1L, from MSDmotif at EBI
  • Fold representative 3h1l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h1l_Q] [3h1l_O] [3h1l_W] [3h1l_N] [3h1l_A] [3h1l_F] [3h1l_H] [3h1l] [3h1l_G] [3h1l_P] [3h1l_V] [3h1l_C] [3h1l_R] [3h1l_S] [3h1l_E] [3h1l_D] [3h1l_I] [3h1l_T] [3h1l_J] [3h1l_U] [3h1l_B]
  • SWISS-PROT database: [P18946] [D0VX26] [D0VX27] [D0VX28] [D0VX29] [D0VX30] [D0VX31] [D0VX32] [Q5ZLR5]
  • Domain organization of [CYB_CHICK] [D0VX26_CHICK] [D0VX27_CHICK] [D0VX28_CHICK] [D0VX29_CHICK] [D0VX30_CHICK] [D0VX31_CHICK] [D0VX32_CHICK] [UCRI_CHICK] by SWISSPFAM
  • Other resources with information on 3H1L
  • Community annotation for 3H1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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