3H2U Cell Adhesion date Apr 14, 2009
title Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With Human Vinculin Tail Domain Vt
authors J.H.Lee, E.S.Rangarajan, S.D.Yogesha, T.Izard
compound source
Molecule: Vinculin
Chain: A, C
Fragment: C-Terminal Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Raver-1
Chain: B, D
Fragment: Rrm 1, Rrm 2, And Rrm 3 Domains
Synonym: Ribonucleoprotein Ptb-Binding 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Raver1, Kiaa1978
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.754 94.906 186.027 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
Primary referenceRaver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions., Lee JH, Rangarajan ES, Yogesha SD, Izard T, Structure. 2009 Jun 10;17(6):833-42. PMID:19523901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3h2u.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (3h2u.pdb2.gz) 74 Kb
  • CSU: Contacts of Structural Units for 3H2U
  • Likely Quarternary Molecular Structure file(s) for 3H2U
  • Structure Factors (300 Kb)
  • Retrieve 3H2U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H2U from S2C, [Save to disk]
  • Re-refined 3h2u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H2U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H2U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H2U, from MSDmotif at EBI
  • Fold representative 3h2u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h2u_B] [3h2u_D] [3h2u] [3h2u_A] [3h2u_C]
  • SWISS-PROT database: [Q8IY67] [P18206]
  • Domain organization of [RAVR1_HUMAN] [VINC_HUMAN] by SWISSPFAM
  • Domain found in 3H2U: [RRM ] by SMART
  • Other resources with information on 3H2U
  • Community annotation for 3H2U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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