3H2Y Hydrolase date Apr 15, 2009
title Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis Wit Bound
authors J.S.Brunzelle, S.M.Anderson, X.Xu, A.Savchenko, W.F.Anderson, Cen Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Gtpase Family Protein
Chain: A
Engineered: Yes
 Organism_scientific: Bacillus Anthracis Str.
Organism_taxid: 260799
Strain: Sterne
Gene: Bas4233, Ba_4562, Gbaa4562, Gbaa_4562, Yqeh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.130 58.990 77.720 90.00 99.38 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand DGI, MSE enzyme
Genes BA, GBAA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3h2y.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3H2Y
  • CSU: Contacts of Structural Units for 3H2Y
  • Likely Quarternary Molecular Structure file(s) for 3H2Y
  • Structure Factors (240 Kb)
  • Retrieve 3H2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H2Y from S2C, [Save to disk]
  • Re-refined 3h2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3H2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3H2Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H2Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h2y] [3h2y_A]
  • SWISS-PROT database: [Q81LQ0]
  • Domain organization of [Q81LQ0_BACAN] by SWISSPFAM
    • Other resources with information on 3H2Y
  • Community annotation for 3H2Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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