3H30 Transferase date Apr 15, 2009
title Crystal Structure Of The Catalytic Subunit Of Human Protein With 5,6-Dichloro-1-Beta-D-Ribofuranosylbenzimidazole
authors K.Niefind, J.Raaf, O.G.Issinger
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A, B
Fragment: Catalytic Subunit, Residues 1-334
Synonym: Ck II
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 43
R_factor 0.156 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.506 71.506 125.789 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand CL, RFZ BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
note 3H30 supersedes 2RKP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe CK2alpha/CK2beta Interface of Human Protein Kinase CK2 Harbors a Binding Pocket for Small Molecules., Raaf J, Brunstein E, Issinger OG, Niefind K, Chem Biol. 2008 Feb;15(2):111-7. PMID:18291315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (3h30.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (3h30.pdb2.gz) 102 Kb
  • Biological Unit Coordinates (3h30.pdb3.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 3H30
  • CSU: Contacts of Structural Units for 3H30
  • Likely Quarternary Molecular Structure file(s) for 3H30
  • Structure Factors (1338 Kb)
  • Retrieve 3H30 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H30 from S2C, [Save to disk]
  • Re-refined 3h30 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H30 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H30
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H30, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h30] [3h30_B] [3h30_A]
  • SWISS-PROT database: [P68400]
  • Domain organization of [CSK21_HUMAN] by SWISSPFAM
  • Domain found in 3H30: [S_TKc ] by SMART
  • Other resources with information on 3H30
  • Community annotation for 3H30 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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