3H52 Hormone Receptor date Apr 21, 2009
title Crystal Structure Of The Antagonist Form Of Human Glucocorti Receptor
authors G.A.Schoch, J.Benz, B.D'Arcy, M.Stihle, D.Burger, R.Thoma, A.Ruf
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B, C, D
Fragment: Steroid-Binding Domain, Unp Residues 528-777
Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Corepressor 1
Chain: N, M
Fragment: Cornr Box 3, Unp Residues 2258-2276
Synonym: N-Cor1, N-Cor
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
symmetry Space Group: P 32 2 1
R_factor 0.226 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.530 99.530 252.430 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand 486, GOL BindingDB enzyme
Primary referenceMolecular Switch in the Glucocorticoid Receptor: Active and Passive Antagonist Conformations., Schoch GA, D'Arcy B, Stihle M, Burger D, Bar D, Benz J, Thoma R, Ruf A, J Mol Biol. 2009 Nov 11. PMID:19913032
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (3h52.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (3h52.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3H52
  • CSU: Contacts of Structural Units for 3H52
  • Structure Factors (884 Kb)
  • Retrieve 3H52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H52 from S2C, [Save to disk]
  • Re-refined 3h52 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H52
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3H52, from MSDmotif at EBI
  • Fold representative 3h52 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h52_C] [3h52_A] [3h52_B] [3h52_D] [3h52] [3h52_N] [3h52_M]
  • SWISS-PROT database: [P04150] [O75376]
  • Domain organization of [GCR_HUMAN] [NCOR1_HUMAN] by SWISSPFAM
  • Domain found in 3H52: [HOLI ] by SMART
  • Other resources with information on 3H52
  • Community annotation for 3H52 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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