3H59	Transferase	date	Apr 21, 2009
title	Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor 2
authors	S.F.Harris, M.Ghate
compound		source
Molecule: Rna-Directed Rna Polymerase Chain: A, B Fragment: Sequence Database Residues 2421-2989 Synonym: Ns5b, P68 Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Hepatitis C Virus Organism_taxid: 11105 Strain: Bk Gene: Ns5b Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.855 106.417 127.195 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	H59 BindingDB	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Non-nucleoside inhibitors of HCV polymerase NS5B. Part 3: Synthesis and optimization studies of benzothiazine-substituted tetramic acids., de Vicente J, Hendricks RT, Smith DB, Fell JB, Fischer J, Spencer SR, Stengel PJ, Mohr P, Robinson JE, Blake JF, Hilgenkamp RK, Yee C, Zhao J, Elworthy TR, Tracy J, Chin E, Li J, Lui A, Wang B, Oshiro C, Harris SF, Ghate M, Leveque VJ, Najera I, Pogam SL, Rajyaguru S, Ao-Ieong G, Alexandrova L, Fitch B, Brandl M, Masjedizadeh M, Wu SY, Keczer SD, Voronin T, Bioorg Med Chem Lett. 2009 Aug 8. PMID:19700319

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (3h59.pdb1.gz) 98 Kb Biological Unit Coordinates (3h59.pdb2.gz) 98 Kb LPC: Ligand-Protein Contacts for 3H59 CSU: Contacts of Structural Units for 3H59 Structure Factors (514 Kb) Retrieve 3H59 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H59 from S2C, [Save to disk] Re-refined 3h59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H59 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H59

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H59, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h59] [3h59_B] [3h59_A] SWISS-PROT database: [P26663] Domain organization of [POLG_HCVBK] by SWISSPFAM

Other resources with information on 3H59

Community annotation for 3H59 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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