3H6C Antimicrobial Protein date Apr 23, 2009
title Crystal Structure Of Human Alpha-Defensin 1 (Mutant Gln22ala
authors M.Pazgier, W.Lu
compound source
Molecule: Neutrophil Defensin 1
Chain: A, B
Synonym: Hnp-1, Hp-1, Hp1, Defensin, Alpha 1, Hp 1-56, Neut Defensin 2, Hnp-2, Hp-2, Hp2;
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.184 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.521 48.354 24.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand CL, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTrp-26 imparts functional versatility to human {alpha}-defensin HNP1., Wei G, Pazgier M, de Leeuw E, Rajabi M, Li J, Zou G, Jung G, Yuan W, Lu WY, Lehrer RI, Lu W, J Biol Chem. 2010 Mar 10. PMID:20220136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (3h6c.pdb1.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 3H6C
  • CSU: Contacts of Structural Units for 3H6C
  • Structure Factors (157 Kb)
  • Retrieve 3H6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3H6C from S2C, [Save to disk]
  • Re-refined 3h6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3H6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3H6C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3H6C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3h6c_B] [3h6c] [3h6c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3H6C: [DEFSN ] by SMART
  • Other resources with information on 3H6C
  • Community annotation for 3H6C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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