3H8H	Transcription	date	Apr 29, 2009
title	Structure Of The C-Terminal Domain Of Human Rnf2ring1b;
authors	J.R.Walker, I.Bezsonova, J.Bacik, S.Duan, J.Weigelt, C.Bountra, A.M.Edwards, C.H.Arrowsmith, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Ring2 Chain: A Fragment: Residues 220-330 Synonym: Ring Finger Protein 2, Ring Finger Protein 1b, Rin Finger Protein Bap-1, Ding Protein, Huntingtin-Interacting Interacting Protein 3, Hip2-Interacting Protein 3; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bap1, Ding, Hipi3, Ring1b, Rnf2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codonplus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28mhl
symmetry	Space Group: P 65 2 2	R_factor 0.200 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.169 72.169 90.966 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	2PE, CL, GOL, SO4	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Ring1B contains a ubiquitin-like docking module for interaction with Cbx proteins., Bezsonova I, Walker JR, Bacik JP, Duan S, Dhe-Paganon S, Arrowsmith CH, Biochemistry. 2009 Nov 10;48(44):10542-8. PMID:19791798

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (3h8h.pdb1.gz) 33 Kb Biological Unit Coordinates (3h8h.pdb2.gz) 64 Kb Biological Unit Coordinates (3h8h.pdb3.gz) 64 Kb Biological Unit Coordinates (3h8h.pdb4.gz) 64 Kb LPC: Ligand-Protein Contacts for 3H8H CSU: Contacts of Structural Units for 3H8H Likely Quarternary Molecular Structure file(s) for 3H8H Structure Factors (127 Kb) Retrieve 3H8H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3H8H from S2C, [Save to disk] Re-refined 3h8h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3H8H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3H8H

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3H8H, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3h8h] [3h8h_A] SWISS-PROT database: [Q99496] Domain organization of [RING2_HUMAN] by SWISSPFAM

Other resources with information on 3H8H

Community annotation for 3H8H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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